◆发表论文
1. Kun Chen , Zuqi Shi, Shengwei Zhang, Yanxin Wang, Xue Xia, Yan Jiang, Sadia Gull, Lin Chen, Hui Guo, Tingkai Wu, Hongyu Zhang*, Jinglan Liu *, Weiwen Kong*. Methylation and expression of rice NLR genes after low temperature stress. Gene. 845 (2022) 146830;doi.org/10.1016/j.gene.2022.146830
2. Xiaoshu Deng#, Xiaohang Han#, Shicong Yu, Zhijian Liu, Daiming Guo,Yao He, Wenyi Li, Yu Tao, Chaowei Sun, Peizhou Xu, Yongxiang Liao, Xiaoqiong Chen, Hongyu Zhang*, and Xianjun Wu*. OsINV3 and Its Homolog, OsINV2, Control Grain Size in Rice. 2020, 21, 2199; doi:10.3390/ijms21062199(IF=4.18)
3. Hui Guo, Tingkai Wu, Shuxing Li, Qiang He, Zhanlie Yang, Wuhan Zhang, Yu Gan, Pingyong Sun, Guanlun Xiang, Hongyu Zhang*, and Huafeng Deng* . The Methylation Patterns and Transcriptional Responses to Chilling Stress at the Seedling Stage in Rice. International Journal of Molecular Sciences. 2019, 20, 5089; doi:10.3390/ijms20205089(IF=4.18)
4. Hongyu Zhang?, Asif Ali?, Feixue Hou, Tingkai Wu, Daiming Guo, Xiufeng Zeng, Fangfang Wang, Huixia Zhao, Xiaoqiong Chen, Peizhou Xu and Xianjun Wu*，Effects of ploidy variation on promoter DNA methylation and gene expression in rice，BMC Plant Biology，2018，https://doi.org/10.1186/s12870-018-1553-5(IF=3.67)
5. 侯飞雪, 彭永彬, 韩小行, 白鹊, 顾朝剑, 孙朝伟, 何曜, 张红宇*.水稻穗顶退化突变体 paa1331 的鉴定及基因定位，《科学通报》，2018，63（31）：3192-3203
6. 张红宇#，崔晓云#，侯飞雪，王一伊，吴挺开，刘禹彤，杨定乾，张洪凯，傅瑶，张向阳，李文丽，吴先军(*). 水稻基因组加倍对籽粒大小调控基因表达的影响，遗传，2016.12.15，38（12）：1102-1113
7. 杜康兮，江青山，徐培洲，韩保林，彭永彬，傅瑶，吴挺开，赵德明，陈家彬，陈晓琼，张红宇*，吴先军*. 水稻籽粒灌浆突变体gef1的鉴定及其基因定位. 《科学通报》.2016，61（25）：2800-2810
8. Hong-Yu Zhang, Hui-Xia Zhao, Shao-Hua Wu, Fang Huang, Kai-Ting Wu, Xiu-Feng Zeng, Xiao-Qiong Chen, Pei-Zhou Xu, Xian-Jun Wu*. Global Methylation Patterns and Their Relationship with Gene Expression and Small RNA in Rice Lines with Different Ploidy. Front.2016. 7:1002. doi: 10.3389/fpls.2016.01002(IF=4.495)
9. Hong-yu Zhang, Ming Luo, Susan D. Johnson, Xiao-wei Zhu, Lei Liu, Fang Huang, Yu-tong Liu,Pei-zhou Xu, Xian-jun Wu*. Parental genome imbalance causes post-zygotic seed lethality and deregulates imprinting in rice，Rice, 2016.9 (1): 43. doi: 10.1186/s12284-016-0115-4(IF=5.79)
10. Hongyu Zhang, Yutong Liu, Mipeng Han, Limei Wu, Zhijian Liu, Xiaoqiong Chen, Peizhou Xu, Xianjun Wu*. The Effects of DNA Methylation on the Expression of Non-imprinted Genes in Rice. J Rice Res 2016，4:168. doi:10.4172/2375-4338.1000168(IF=1.18)
11. Hongyu Zhang, Ming Luo, Robert Day, Mark J. Talbot, Aneta Ivanova, Anthony R. Ashton, Abed M. Chaudhury, Richard MacKnight, Maria Hrmova, Anna M. Koltunow* . Developmentally regulated HEART STOPPER, a mitochondrially targeted L18 ribosomal protein gene, is required for cell division, differentiation and seed development in Arabidopsis. JEXBOT, Journal of Experimental Botany,2015,66（19）：5867-5880. (IF=3.417)
12. 吴丽梅, 朱晓炜, 崔晓云, 刘志坚, 刘禹彤, 徐培洲, 陈晓琼, 吴先军, 张红宇*.调控水稻异倍性杂交种子败育的相关基因分析。《科学通报》,2015, 60(17): 1592-1601
13. Yonghang Tian, Hongyu Zhang, Peizhou Xu, Xiaoqiong Chen, Yongxiang Liao, Baolin Han, Xiangbin Chen, Xiangdong Fu, Xianjun Wu*. Genetic mapping of a QTL controlling leaf width and grain number in rice. Euphytica (2015) 202:1–11. DOI 10.1007/s10681-014-1263-5
14. Hongyu Zhang, Abed Chaudhury, Xianjun Wu*.Imprinting in Plants and Its Underlying Mechanisms. Journal of Genetics and Genomics ,2013,40(5): 239-247(IF=2.924)
15. Luo M, Taylor JM, Spriggs A, Zhang H, Wu X, et al. (2011) A Genome-Wide Survey of Imprinted Genes in Rice Seeds Reveals Imprinting Primarily Occurs in the Endosperm. PLoS Genet 7(6): e1002125. doi:10.1371/journal.pgen. 1002125 (IF =8.69)
16. Aihua Wang, Damien Garcia, Hongyu Zhang, Ke Feng, Abed Chaudhury, Fred Berger, W. James Peacock, Elizabeth S. Dennis, Ming Luo * (2010). The VQ motif protein IKU1 regulates endosperm growth and seed size in Arabidopsis. Plant Journal.63: 670-679（IF =6.94）
17. 张红宇，徐培洲，杨华，吴先军*.拟南芥的印记基因和印记表达调控,遗传,2010,32（7）：670-676
18. 张红宇,彭海,吴绍华,黄静,徐培洲,汪旭东,吴先军*.双胚苗水稻中单倍体和二倍体不同器官的cDNA-AFLP分析,遗传,2009,31(3): 305-310
19. 张红宇, 杨富云, 高梅, 徐培洲, 张全芳, 徐建第, 吴先军*.PiA水稻悬浮细胞系的建立。生物工程学报。2009，03
20. 张红宇,彭海,李平川,邓其明,徐培洲,李云,汪旭东,吴先军*.运用 RT-PCR方法对双胚苗水稻中单倍体和对应二倍体的芯片数据的器官特异性分析，自然科学进展, 2008, 18(8): 946-950
21. Zhang H Y, Peng H, Li P C, Deng Q M, Xu P Z, Li Y, Wang X D, Wu X J*. The microarray analysis for gene expression in haploids and diploids derived from twin-seedling rice. Sci China Ser C, 2008, 51(6): 503-512(IF=2.297)
22. Peng H#, Zhang H Y#, LI Y, Xu P Z, Wang X D, Wu X J*. Natural homologous triploidization and DNA methylation in SARII-628, a twin-seedling rice (Oryza sativa L.). Rice Sci, 2007, 14(4): 265-271
23. Zhang H Y, Peng H, Li Y, Xu P, Wang X, Wu X J. Patterns of DNA cytosine methylation between haploids and corresponding diploids in rice. Chinese Sci Bull, 2006, 51(14): 1721-1728 (IF=1.579)
24. 张红宇, 吴先军, 唐克轩, 汪旭东, 孙小芬, 周开达*. 半夏凝集素基因(pta)导入水稻及其表达的初步研究[J]. 遗传学报, 2003,(11)